Data from: Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers

ann_arg_fst_mapContains: all SNPs kept in the H. annuus - H. argophyllus comparison, name of reference gene, position of SNP in gene, genotypes of all individuals, Fst, Fit, Fis, name, linkage group, position in centimorgan, unique position on map, number of nucleotides in gene, boolean value whether SNP is in the top5% most divergent.bol_exi_fst_mapContains: all SNPs kept in the H. exilis - H. bolanderi comparison, name of reference gene, position of SNP in gene, genotypes of all individuals, Fst, Fit, Fis, name, linkage group, position in centimorgan, unique position on map, number of nucleotides in gene, boolean value whether SNP is in the top5% most divergent.deb_pet_fst_mapContains: all SNPs kept in the H. debilis - H. petiolaris comparison, name of reference gene, position of SNP in gene, genotypes of all individuals, Fst, Fit, Fis, name, linkage group, position in centimorgan, unique position on map, number of nucleotides in gene, boolean value whether SNP is in the top5% most divergent.unique_SNPContains a list of all SNPs found in either one of the three species pairs. List contains unique name (gene name and position concatenated) and the fst value for all three species pairs.unique_genesContains list of all unique polymorphic genes found in either of the three species pairs, and the fst value for all three species pairs.ann_arg_fst_map_dnds.outContains list of all polymorphic genes in H. annuus - H. argophyllus species pairs and dn, ds, dn/ds values.bol_exi_fst_map_dndsContains list of all polymorphic genes in H. exilis - H. bolanderi species pairs and dn, ds, dn/ds values.deb_pet_fst_map_dndsContains list of all polymorphic genes in H. debilis - H. petiolaris species pairs and dn, ds, dn/ds values.ann_arg_fst_map_cluster_nonoverlapping_windowsContains list for H. annuus - H. argophyllus of all unique positions in the genetic map, linkage groups, associated fst valuse, and other various statistics (not used in this study, but part of the original script).bol_exi_fst_map_cluster_nonoverlapping_windowsContains list for H. exilis - H. bolanderi of all unique positions in the genetic map, linkage groups, associated fst valuse, and other various statistics (not used in this study, but part of the original script).deb_pet_fst_map_cluster_nonoverlapping_windowsContains list for H. debilis - H. petiolaris of all unique positions in the genetic map, linkage groups, associated fst valuse, and other various statistics (not used in this study, but part of the original script).