Reprocessed Chitarrini et al. (2020), Shi et al. (2024), and Froussios et al. (2019) RNA-seq datasets for cross-study transcriptomic comparisons in Rpv12-carrying grapevine (Supplementary Tables 9-11)

Supplementary Tables 9-11, accompanying data of the study: A predicted LRIP1/SOBIR1-centered receptor network shows genotype-specific signature in Rpv12-carrying grapevine . Contains per-sample DESeq2 size factors, size-factor-normalized and/or rlog-transformed expression values, and DESeq2 differential transcription results for three independently reprocessed, publicly available RNA-seq datasets used for cross-study comparison: Chitarrini et al. (2020) (ENA study PRJEB28042), Shi et al. (2024) (SRA BioProjects PRJNA862686, PRJNA1121615, PRJNA1118503), and Froussios et al. (2019) (ENA study ERP021226). This study's own raw RNA-seq data have been deposited in the NCBI Sequence Read Archive under BioProject PRJNA1358055. This study's own processed data -- including DESeq2 differential transcription results, AlphaFold2-Multimer- tested PPIs, raw counts, ComBat batch-effect-corrected counts, and sample metadata -- have been deposited in Zenodo under DOI 10.5281/zenodo.21623285.