Table A. The full list of the simulation study results.

The results were obtained by running the simulation study under different values of the mean, sample sizes. Table B. Summary of the basic information of all the subjects that were included in the analysis. Table C. Training time and performance of different models in the sex classification task. Three different CNN architectures were used: LeNet, ResNet50, and Xception. The performance was measured by the macro F1 and MCC of running these models on the test set. Table D. The full list of the classification results of all SNPs in different three orientations. Table E. The full list of the permutation test results for top 500 SNPs in the axial direction and the genomic context annotation of these SNPs. Table F. The full list of the permutation test results for top 500 SNPs in the coronal direction and the genomic context annotation of these SNPs. Table G. The full list of the permutation test results for top 500 SNPs in the sagittal direction and the genomic context annotation of these SNPs. Table H. Phenotype-Wide Association Study (PheWAS) annotation of the top 500 SNPs in each of the three directions: axial, coronal and sagittal. Table I. The overlap of the three lists of top SNPs ranked by MCC. Table J. The overlap of the three lists of top SNPs ranked by macro F1 score. (XLSX)