TE-related genes: annotation, characterisation, and expression.

This dataset contains the gene analysis workflow used to evaluate the genes expression and to find the genes potentially involved in the TEs transposition machinery. Also, it contains the gene annotation file (bed format), the proteome stem from (https://doi.org/10.1371/journal.pgen.1006777), and several gene expression tables based on the previously mentioned study's transcriptome. Finally, it contains the scripts, output table and genes lists from the proteome analysis which aim was to identify genes potentially linked to the TE transposition machinery based on extensive HMM profile search (concatenation of pfam32 and GyDB2.0). Download: In order to preserve the folder and file tree structure (easier to reproduce the analyses), select all the files and click on download (original format). The download of a .zip archive should start. Once downloaded, extract the contents of the archive.

搜集汇总

背景与挑战

背景概述

该数据集专注于植物寄生线虫M. incognita中与转座子（TE）相关基因的研究，包含基因注释、表达分析和转座机制探索的工具和结果。具体提供了基因分析工作流程、基于HMM配置文件（pfam32和GyDB2.0）的蛋白质组分析脚本和基因列表，旨在识别可能参与TE转座机制的基因，并支持相关转录组数据的可重复分析。