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RMSD between equilibrated closed and open pore structures from different simulation protocols.

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https://figshare.com/articles/dataset/_RMSD_between_equilibrated_closed_and_open_pore_structures_from_different_simulation_protocols_/244216
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RMSD protein and RMSD domain were determined by aligning either the entire protein or all TM helices in the closed to the open pore structure for different sections of the protein. Values were calculated by aligning each of the specified sections to the equivalent section in the closed state. aOne of the subunits in the structure shows some deformation in the helix which distorts the average and was not included in calculating the average RMSD. The number in the bracket is the average calculating using all 5 subunits.
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2012-09-20
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