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Pool-based PacBio long-read amplicon sequencing of the ACCase gene

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NIAID Data Ecosystem2026-05-01 收录
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https://www.ncbi.nlm.nih.gov/sra/ERP138461
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To provide a high throughput approach to monitor the prevalence of target-site resistance to herbicide in agricultural fields, we describe a PacBio amplicon workflow for pooled samples that can be easily adapted to any gene of interest, independently of the organism. In this proof-of-concept study, we sequenced with PacBio High Fidelity (HiFi) reads long-range amplicons (13.2 kb) encompassing the entire ACCase gene in pools of over hundred blackgrass (Alopecurus myosuroides) individuals for various Europe-wide (9) and in German (64) field populations.
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2024-03-07
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