Virus-host interactions along a grassland soil depth profile

This repository contains data used in Muscatt et al. 2022 (preprint).

c1.ntw.gz = vConTACT2 network output file

DNAP_plus_ref.faa.gz = fasta amino acid file containing DNA polymerase protein sequences used for phylogenetic tree

DNAP_tree.gz = tree file for jumbo phage phylogenetic tree based on DNA polymerase gene

edges.csv.gz = edges for drawing vConTACT2 network

gene_to_genome.csv.gz = viral gene to genome index used as input to vConTACT2

genome_by_genome.csv.gz = viral cluster statuses outputted by vConTACT2

MAG_bins.fna.gz = fasta nucleotide file containing 285 microbial MAG bins previously assembled by Sharrar et al. 2020

nodes.csv.gz = nodes for drawing vConTACT2 network

rpS3.fna.gz = fasta nucleotide file containing 1516 rpS3 sequences

vOTU_prediction.csv.gz = stats on viral scaffold prediction

vOTU_proteins.faa.gz = fasta amino acid file containing XXX dsDNA vOTU genes

vOTUs.fna.gz = fasta nucleotide file containing 10,196 

dsDNA vOTUs

The Supplementary table titles are as follows:
Table S1: Assembly statistics for sample libraries.

Table S2: DNA vOTU raw reads.

Table S3: Sources of hits to viral sequences in PhageClouds database.

Table S4: Microbial OTU normalised coverage. 

Table S5: Raw read bacterial class taxonomy.

Table S6: Annotations of viral-encoded auxiliary metabolic genes.

Table S7: Microbial MAG normalised coverage.

Table S8: Annotations of viral genes under positive selection.