Reconstructing the sequence specificities of RNA-binding proteins across eukaryotes
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Supplemental tables and figures for the manuscript "Reconstructing the sequence specificities of RNA-binding proteins across eukaryotes".
Descriptions of individual files:
Supplemental.Figures.Sasse.Ray.Laverty.et.al.pdf
Figures S1-S7. Figure legends are contained within the document.
TableS1.Sasse.Ray.Laverty.et.al.xlsx
Table S1. RNAcompete experimental details.
TableS2.Sasse.Ray.Laverty.et.al.xlsx
Table S2. Performance of JPLE and other RNA-specificity prediction methods for the 355 training set proteins.
TableS3.Sasse.Ray.Laverty.et.al.xlsx
Table S3. Performance of residue importance scores and other prediction metrics for 26 PDB co-complex structures.
TableS4.Sasse.Ray.Laverty.et.al.xlsx
Table S4. Count of identified RBPs and RBPs with assigned motifs across 690 eukaryotes.
TableS5.Sasse.Ray.Laverty.et.al.xlsx
Table S5. Conserved RNA motif group assignments for 8,957 RBPs from 53 species.
TableS6.Sasse.Ray.Laverty.et.al.xlsx
Table S6. Conserved RNA motif group ages and clade assignments.
TableS7.Sasse.Ray.Laverty.et.al.xlsx
Table S7. Half-life data for putative stability-regulating A. thaliana RBPs.
Contains data sourced from Narsai et al. (2007) Plant Cell. (doi: 10.1105/tpc.107.055046)
TableS8.Sasse.Ray.Laverty.et.al.xlsx
Table S8. Deadenylation assay quantification.
FileS1.Sasse.Ray.Laverty.et.al.hmm
File S1. Extended profile HMM for the RRM domain.
提供机构：
figshare
创建时间：
2024-08-27
