Tree files (as newick and pdf files) and corresponding alignments for "Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals"|系统发育分析数据集|基因比对数据集

"alpha_amylase_1_LG_I_G4_1000UFboot_newick.tre": raw tree file in newick format of alpha amylase 1, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+I+G4, branch support was assessed with 1000 ultrafast bootstrap replicates).<br>"alpha_amylase_1_LG_I_G4_1000UFboot.tre.pdf": unrooted tree of alpha amylase 1 as pdf file, corresponding to Table 1. Colored by lineage.<br>"alpha_amylase_1_trimal0.8.fasta": trimmed alignment used for tree reconstruction of alpha amylase 1<br>"alpha_amylases_2_3_4_5_LG_R10_1000UFboot_newick.tre": raw tree file in newick format of alpha amylases 2-5, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+R10, branch support was assessed with 1000 ultrafast bootstrap replicates).<br>"alpha_amylases_2_3_4_5_LG_R10_1000UFboot.tre.pdf": unrooted tree of alpha amylases 2-5 as pdf file, corresponding to Table 1. Colored by lineage.<br>"alpha_amylases_2_3_4_5_trimal0.8.fasta": trimmed alignment used for tree reconstruction of alpha amylases 2-5<br>"alpha_glucosidases_1_2_3_4_LG_R10_1000UFboot_newick.tre": raw tree file in newick format of alpha glucosidases 1-4, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+R10, branch support was assessed with 1000 ultrafast bootstrap replicates).<br>"alpha_glucosidases_1_2_3_4_LG_R10_1000UFboot.tre.pdf": unrooted tree of alpha glucosidases 1-4 as pdf file, corresponding to Table 1. Colored by lineage.<br>"alpha_glucosidases_1_2_3_4_trimal0.8.fasta": trimmed alignment used for tree reconstruction of alpha glucosidases 1-4<br>"glycogen_debranching_enzyme_AGL_LG_R7_1000UFboot_newick.tre": raw tree file in newick format of glycogen debranching enzyme AGL, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+R7, branch support was assessed with 1000 ultrafast bootstrap replicates).<br>"glycogen_debranching_enzyme_AGL_LG_R7_1000UFboot.tre.pdf": unrooted tree of glycogen debranching enzyme AGL as pdf file, corresponding to Table 1. Colored by lineage.<br>"glycogen_debranching_enzyme_AGL_trimal0.8.fasta": trimmed alignment used for tree reconstruction of glycogen debranching enzyme AGL<br>"glycogen_phosphorylase_PYG_LG_R10_1000UFboot_newick.tre": raw tree file in newick format of glycogen phosphorylase PYG, corresponding to Table 1. Tree reconstruction performed with IQ-TREE (selected model based on ModelFinder: LG+R10, branch support was assessed with 1000 ultrafast bootstrap replicates).<br>"glycogen_phosphorylase_PYG_LG_R10_1000UFboot.tre.pdf": unrooted tree of glycogen phosphorylase PYG as pdf file, corresponding to Table 1. Colored by lineage.<br>"glycogen_phosphorylase_PYG_trimal0.8.fasta": trimmed alignment used for tree reconstruction of glycogen phosphorylase PYG