MOESM1 of Genome-wide profiling of transcribed enhancers during macrophage activation

Additional file 1: Table S1. 184 macrophage samples used in this study. Table S2. 744 FANTOM5 non-macrophage mouse samples that were used as a background set for the calculation of macrophage-specific expression. Table S3. Established regulatory associations between transcribed enhancers, promoters and protein-coding genes. Table S4. Gene set enrichment analysis of 1306 genes associated with three or four enhancers. Table S5. Gene set enrichment analysis of 4149 genes not associated with any enhancer. Table S6. Gene set enrichment analysis of top 500 genes with the highest expression in macrophages among 1481 genes associated with macrophage-specific enhancers. Table S7. Gene set enrichment analysis of top 500 genes with the highest expression in macrophages among 1207 genes associated with non-macrophage-specific enhancers. Table S8. Regulatory associations between 115 M(IFN-γ)-responsive enhancers and 105 M(IFN-γ)-responsive genes. Table S9. Regulatory associations between 131 M(IL-4/IL-13)-responsive enhancers and 98 M(IL-4/IL-13)-responsive genes. Table S10. Over-representation analysis of binding sites in macrophage-specific and non-macrophage-specific enhancers. Table S11. Over-representation analysis of binding sites in E1 and E2 enhancers.