Predicted circRNA candidates of all software tools

The raw, filtered or/and annotated predicted candidates by each software under different datasets (can be downloaded from figshare). circ_candidates.bed (CIRCexplorer2) or other different files exclude followings: raw identified circRNA bed or other format files for each software package circ_candidates_convert.bed: coonverted circRNA bed format file (genome coordinate converted to uniform 0-based format) circularRNA_known.txt: annotated circRNA information file generated from CIRCexplorer2 annotate moudle circRNA_known_annotated.txt: it contains annotated circRNA list (circularRNA_known.txt) merged by the known circRNA retrieved from circBase and circAtlas database BackgroundPlotdf.csv: The dataset of plotting upset plot of circRNA candidates on background datasets with different depths BackgroundRaw.csv: Raw datasets of expression matrix of circRNA predicted by all software on background datasets with different depths performance.csv: recorded prediction performance indices of all software tools