Supplementary Data S9 - DESeq2 result tables of all datasets analyzed along with flag columns for each of the 8 GO terms used throughout the manuscript. Metadata on the GO terms is included in the sheet "GO_metadata".

Supplementary Data S9 of the manuscript "Hypoxia leads to reduced mito-nuclear gene expression and to increased mtDNA transcriptional pausing in human cells" by Shtolz et al.

sheet name - results: DESeq2 "result" output. Main columns:
Name: gene symbolbaseMean: Mean normalized expression across all sampleslog2FoldChange: log2 fold-change between treatment (hypoxia) and control (normoxia).lfcSE: Standard error of the log2 fold-changestat: Negative binomial test statistic.p-valuepadj: Benjamin-Hodgkin-adjusted p-valuedataset: Name of the datasetcell lineComplex: Complex association of gene (either complex I, II, III, IV and V of OXPHOS or the mito-ribosome)Genome: Genome of the gene (NUC for nucleus or MT for mitochondrial DNA, applied only to OXPHOS or mito-ribosome genes).ensembl.gene: Ensemble gene ID.GO_000x: 8 columns, binary columns, one for each of the 8 GO terms used in the manuscript.sheet name - GO_metadata: contains information on each of the GO terms used in the manuscript and as columns in the "results" sheet.
Data used to generate Figures 1, 2, 3a-c, 4a, 4b and 4e, and Supplementary Figures S1, S2, S5, S6 and S7.