Additional file 2 of Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome

Supplementary Table 1. Soil analysis of Vredepeel field. Supplemantary Table 2. Results of PERMANOVA analysis of the Bray-Curtis dissimilarities for microbial community structure based on 16S rRNA gene at OTU level. Bold face indicates statistical significance (P < 0.05). P-values are based in 9999 permutations. Supplementary Table 3. Number of correlations per phylum. Showing the top five phyla with most correlation per treatment. Supplementary Table 4. Top five OTUs with more number of correlations (that is, degree) and betweeness centrality for each treatment. Supplementary Table 5. List of 26 COG categories. Supplementary Table 6. Differential expression of COG genes in rhizosphere comparing the non-inoculated fox-resistant cultivar (Rs) with the pathogen infection (Rs+fox), based on LDA Effect Size analysis. Supplementary Table 7. Differential expression of COG genes comparing the fox-resistant cultivar infected (Rs+fox) with the susceptible cultivar infected (Sc+fox), based on LDA Effect Size analysis. Supplementary Table 8. Analysis of the Biosynthetic Gene Clusters of the rhizosphere samples from common bean cultivars. Supplementary Table 9. Analysis of the abundance of Biosynthetic Gene Clusters in the rhizosphere comparing the non-inoculated fox-resistant cultivar (Rs) with the pathogen infection (Rs+fox). Supplementary Table 10. Analysis of the abundance of Biosynthetic Gene Clusters in the rhizosphere comparing the non-inoculated susceptible cultivar (Sc) with the pathogen infection (Sc+fox). Supplementary Table 11. Analysis of the abundance of Biosynthetic Gene Clusters in the rhizosphere of the fox-resistant cultivar (Rs). Supplementary Table 12. Analysis of the abundance of Biosynthetic Gene Clusters in the rhizosphere of the susceptible cultivar (Sc). Supplementary Table 13. Differential expression of COG genes in the endosphere of common bean comparing the non-inoculated fox-resistant cultivar (Rs) with the pathogen infection (Rs+fox), based on LDA Effect Size analysis. Supplementary Table 14. Differential expression of COG genes in the endosphere of common bean comparing the infected fox-resistant cultivar (Rs+fox) with the infected susceptible (Sc+fox), based on LDA Effect Size analysis. Supplementary Table 15. Analysis of the abundance of Biosynthetic Gene Clusters in the endosphere comparing the non-inoculated fox-resistant cultivar (Rs) with the pathogen infection (Rs+fox). Supplementary Table 16. Analysis of the abundance of Biosynthetic Gene Clusters in the endosphere of the susceptible common bean cultivar comparing the non-inoculated (Sc) with the pathogen-inoculated (Sc+fox) treatment.