Comparison of Pectobacterium carotovorum RC5297 transcription profiles depending on presence or absence of the PcaRCI RM system

This project aimed to investigate the transcriptomic differences between a Pectobacterium carotovorum wild-type strain (RC5297) and a derivative in which a restriction-modification system, termed PcaRCI, is knocked out. The aim was to identify genes whose expression might be regulated through methylation by the methyltransferase of the RM system. Examination of two different bacterial strains (P. carotovorum RC5297 wild type and P. carotovorum RC5297 PcaRCI RM knockout) with five replicates each (ten samples in total)