A list of putative TCS components found in the transcriptome of differentiating barley endosperm transfer cells (ETCs) by 454 sequencing.
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Sequence information was complemented using public available EST databases and genomic sequences generated at the IPK Gatersleben. Prediction of coding sequences and protein sequences was done using FGENESH (http://linux1.softberry.com) and Augustus gene prediction (http://augustus.gobics.de) web-based interfaces.$noted domains are histidine kinase domain (HK), receiver domain (REC), GAF domain which is implicated in ethylene binding, CHASE domain for cytokinin binding, conserved histidine-containing phosphotransfer domain (HPt), Myb-like DNA binding domain (MYB), CCT motif found in clock proteins (CCT); brackets mark diverged domains and indicate changed amino acids,*not present in HarvEST 35,**not present in full-length cDNA collection of spring barley,#inferred amino acid sequences were compared with protein sequences computed in the Rice Genome Annotation project using the BlastP tool with the default settings,§full-length protein sequence.
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2015-12-02



