MOESM1 of Gene expression vs. sequence divergence: comparative transcriptome sequencing among natural Rhinolophus ferrumequinum populations with different acoustic phenotypes

Additional file 1: Table S1. Summary of investigated climate and environmental variables. Table S2. Summary of Trinity de novo transcriptome assembly statistics of Rhinolophus ferrumequinum. Table S3. Annotation result statistics between unigenes and databases. Table S4. Nr functional annotation of four unigene datasets hits to Rhinolophus sinicus and other species. Table S5. Complete results of the Gene Ontology (GO) enrichment analysis for gene sets in modules defined by Weighted gene co-expression network analysis (WGCNA). Table S6. Complete results of the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis for gene sets in modules defined by WGCNA. Table S7. Complete results of the GO enrichment analysis for the merged gene set in modules significant associated with RF. Table S8. Complete results of the GO enrichment analysis for the merged gene set in modules significantly associated with FL. Table S9. Outlier loci (N = 349) identified in two tests for selection. ‘SNP position’ shows the position in the contig that contains the outlier loci. ‘Tests’ shows which tests identified the SNP as an outlier. Table S10. Detail of genes under positive selection.