Additional file 2 of Turnover of strain-level diversity modulates functional traits in the honeybee gut microbiome between nurses and foragers

Additional file 2: Table S1. Sample collection information. Table S2. Table of all strain genomes included in the reference database, their Species/SDP abbreviation used in this study, their corresponding full species name (if existing) and the host where they were isolated. Genomes used as representative in the reduced database are marked by ‘y’ in the last column. Table S3. Proportions of reads mapping to species isolated in non-A. mellifera hosts. The proportions are computed as the number of reads mapping to the species, divided by the number of reads mapping to the same phylotype for this sample.Table S4. Table of differentially abundant orthogroups showing which behavioral state they were enriched in along with the associated fold-change, p-values, their COG category and functional annotation. Table S5. Matrix of the counts of the OGs annotated as H category significantly enriched in the forager samples compared to the al OGs and all COG categories.