Modulation of apple leaf trancriptome by Erwinia amylovora infection in Evereste (resistant) and MM106 (susceptible) genotypes

Investigation of whole genome gene expression level changes in leaves of Evereste and MM106 genotypes 6 and 24 hours after infiltration (hpi) by Erwinia amylovora (Ea) versus mock (water + 0,01 % Silwet). This analysis include transcritome comaprison between the two apple genotypes just before inoculation (T0). Overall design: A total of 30 samples, corresponding to 3 biological replicates (from 3 independent experiments) for each treatment, were used for differential gene expression analysis : Evereste (T0), MM106 (T0), Evereste (mock 6 hpi), Evereste (Ea 6 hpi), MM106 (mock 6 hpi), MM106 (Ea 6 hpi), Evereste (mock 24 hpi), Evereste (Ea 24 hpi), MM106 (mock 24 hpi), MM106 (Ea 24 hpi).