sortChIC testdata package
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下载链接：
https://figshare.com/articles/dataset/sortChIC_testdata_package/23544774
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资源简介：
Test data from the protocol single-cell sortChIC, presented in Zeller, Yueng et. al., Nat. Gen . This dataset includes BAM files that represent MNase cuts targetted at **H3K27me3** histone mark in single-cells from adult mouse bone marrow, sorted into 384 well plates, along with associated metadata.
List of contents:
- 4x BAM files (indexed), that contain data from 4x 384-well plates, reads are subsetted for **chromosome 1** (mm10/GRCm38)
- mm10_chr1.2bit: 2-bit file storing the sequence information for mouse chromosome 1
- mm10_blacklist.bed: blacklisted regions to avoid
- sortChIC_barcodes.txt: barcodes corresponding to the 384-well plate
- metadata.txt: metadata file that defines cell types from FACS label
Links for reference:
- https://www.nature.com/articles/s41588-022-01260-3
- https://github.com/vivekbhr/sincei
创建时间：
2023-06-20
