GDC TCGA cancer datasets for GenMorw
收藏DataCite Commons2025-04-27 更新2025-04-16 收录
下载链接:
https://www.scidb.cn/detail?dataSetId=c746692f84d1406582b2c115e6feec26
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资源简介:
We downloaded and organized 33 cancer data from GDC TCGA via the UCSC Xena platform (https://xena.ucsc.edu/) for input into our GenMorw algorithm. Users can decompress the files and place them in the 'Cancer Data' folder within the GitHub repository to obtain prioritization of driver gene predictions.It comprises 33 directories (GDC_CANCER), along with a methylation annotation file (illuminaMethyl450_hg38_GDC) and a gene coding annotation file (gencode.v22.annotation.gene.probeMap).Each directory includes a download information file (informations.tsv), cancer patient phenotypes (TCGA-CANCER.GDC_phenotype.tsv.gz), copy number variation (TCGA-CANCER.gistic.tsv.gz), gene expression (TCGA-CANCER.htseq_fpkm.tsv.gz), methylation (TCGA-CANCER.methylation450.tsv.gz), miRNA (TCGA-CANCER.mirna.tsv.gz), gene mutation data (TCGA-CANCER.mutect2_snv.tsv.gz), and patient survival data (TCGA-CANCER.survival.tsv).
提供机构:
Science Data Bank
创建时间:
2024-06-03



