Additional file 2 of Determination of complete chromosomal haplotypes by bulk DNA sequencing

Additional file 2 This table reports the performance of mLinker solve using haplotype linkage in the RPE-1 linked reads data. For each round of minimization, the following numbers are reported: number of spin flips (column 1), number of block switches (column 2), CPU clock time of spin flipping (column 3) and block switching (column 4), and the maximum residual block-switching energy penalty (column 5). Details of the minimization procedure is provided in Additional file 1:Solving haplotype phase by minimization; spin flipping and block switching are defined in Eqs. (18) and (19).