Data used in phylogenetic analyses

Data used in phylogenetic analyses, in column separated text format. First column is species name, second column is name of data partition, third column is a unique id for the species/partition data (ie GenBank GI number), fourth column is sequence or morphological data. The sequence data are derived from the raw 454 data, or from other sources. Raw 454 data was assembled using Newbler. We pulled genes from transcriptomes using Hamstr. We then aligned sequences with MUSCLE, and cut out ambiguously aligned regions with AliScore/AliCut. Unique identifiers with "Voucher" in the name are previously unpublished, and will be placed in GenBank. This 4-column data format can be used with many tools developed in the Osiris package for conducting phylogenetics in Galaxy.