Sex-combined summary statistics on height from "Role of X chromosome and dosage compensation mechanisms in complex trait genetics"
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https://zenodo.org/doi/10.5281/zenodo.15131076
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Full summary statistics of height GWAS in sex-combined population in UKB generated in "Role of X chromosome and dosage compensation mechanisms in complex trait genetics".
GWAS were performed using BOLT-LMM v2.3.2. The files contain the following columns:
SNP: rs number or ID string
CHR: chromosome
BP: base pair position mapped to assembly GRCh37
GENPOS: genetic position either from bim file or interpolated from genetic map
ALLELE1: first allele in bim file (usually the minor allele), used as the effect allele
ALLELE0: second allele in bim file, used as the reference allele
A1FREQ: frequency of first allele
F_MISS: frequency of first allele
CHISQ_LINREG: standard linear regression chi-square statistics
P_LINREG: standard linear regression p-value
BETA: effect size from BOLT-LMM approximation to infinitesimal mixed model
SE: standard error of effect size
CHISQ_BOLT_LMM_INF: infinitesimal mixed model association test chi-square statistics
P_BOLT_LMM_INF: infinitesimal mixed model association test p-value
CHISQ_BOLT_LMM: non-infinitesimal mixed model association test chi-square statistics
P_BOLT_LMM: non-infinitesimal mixed model association test p-value
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Zenodo
创建时间:
2025-04-03



