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Ovarian data used in CHETAH paper

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Figshare2021-01-20 更新2026-04-08 收录
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https://figshare.com/articles/dataset/Ovarian_data_used_in_CHETAH_paper/13614377/1
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This is the ovarian data set used in the CHETAH paper:<br> Kanter, Jurrian K. de, Philip Lijnzaad, Tito Candelli, Thanasis Margaritis, and Frank C. P. Holstege. “CHETAH: A Selective, Hierarchical Cell Type Identification Method for Single-Cell RNA Sequencing.” <i>Nucleic Acids Research</i>. Accessed July 1, 2019. https://doi.org/10.1093/nar/gkz543 <br>it was described in Schelker, Max, Sonia Feau, Jinyan Du, Nav Ranu, Edda Klipp, Gavin MacBeath, Birgit Schoeberl, and Andreas Raue. “Estimation of Immune Cell Content in Tumour Tissue Using Single-Cell RNA-Seq Data.” <i>Nature Communications</i> 8, no. 1 (December 11, 2017): 2032. https://doi.org/10.1038/s41467-017-02289-3<br>(but no longer available in figshare). <br>The Seurat 3 SingleCellExperiment format, consisting of <br> 25462 genes x 3114 cells of types with meta.data 'celltypes' distributed as<br> Unknown 125 CD4 T cell 323 CD8 T cell 31 reg. T cell 1 B cell 18 Macrophage 2057 Dendritic 114 NK 109 CAF 36 Tumor 300<br>For the other data in the CHETAH paper see https://figshare.com/s/aaf026376912366f81b6<br><br>
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2021-01-20
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