Analysis of nearly 3,000 archaeal genomes from terrestrial geothermal springs sheds light on interconnected biogeochemical processes

This dataset contains supplementary data for the analyses presented in:Yan-Ling Qi*, Ya-Ting Chen*, Yuan-Guo Xie, Yu-Xian Li, Yang-Zhi Rao, Meng-Meng Li, Qi-Jun Xie, Xing-Ru Cao, Lei Chen, Yan-Ni Qu, Zhen-Xuan Yuan, Zhi-Chao Xiao, Lu Lu, Jian-Yu Jiao, Wen-Sheng Shu, Wen-Jun Li†, Brian P. Hedlund†, Zheng-Shuang Hua†. Analysis of nearly 3,000 archaeal genomes from terrestrial geothermal springs sheds light on interconnected biogeochemical processes (under review)Dataset contents:Archaea.treefile: Archaeal phylogenomic tree of 53 concatenated conserved archaeal marker genes in newick format.Hydrogenase.treefile: The phylogenetic tree of hydrogenase in newick format.Microbial networks.pdf: Figures of co-occurrence networks between Archaea and Bacteria based on rpS3 protein sequences in 48 thermoacidic (a) and 31 thermoalkaline (b) springs.rpS3 database.fasta: The curated database of rpS3 protein sequences in fasta format.