Datasets - From research to application: evaluation of literaturebased and newly identified GWAS and GP-derived loci for anthracnose resistance in white lupin, across validation panels and environments

Supplementary Table S1: Samples included in the diversity panel, indicating the status of the accession, estimated marginal means phenotypic values, standard error and predicted phenotypic values as well as all genotyping available for the panel.

Supplementary Table S2: Samples included in the multi-parental panel, sAUDPC values from the field phenotyping, and predicted phenotypic values, letter coding of the pedigree, indicator of the generation, as well as all genotyping available for the panel.

Supplementary Table S3: Samples included in the multi-parental panel, estimated marginal means of phenotypic values from the climate chamber phenotyping, standard error and predicted phenotypic values as well as all genotyping available for the panel.

Supplementary Table S4: Samples included in the biparental panel, phenotypic values from a single late-season field phenotyping, and predicted phenotypic values, as well as all genotyping available for the panel.

Supplementary Table S5: Marker information of the panel of markers used for individual assessment indicating the chromosome and location of the SNP used for marker design, indicating reference and alternative allele at each loci, which primer type it is, the respective primer sequence, as well as marking which marker was transformed from a previous publication or was determined de novo for the study. In the latter case, also highlighting which model and genotyping was used for the marker definition and the explained variance.

Supplementary Table S6: Marker information of the panel of markers used for genomic prediction indicating the chromosome and location of the SNP used for marker design, indicating reference and alternative allele at each locus, marker effect, which primer type it is, the respective primer sequence, as well as marking which marker was transformed from a previous publication or was determined de novo for the study. In the latter case, also highlighting which model and genotyping was used for the marker definition.

Supplementary Table S7:  Significance, explained variance, effect size and false discovery rate of each locus from the Analysis of Variance (ANOVA), including the number homo- and heterozygotes at each locus, and the respective anthracnose score means at each locus. "NA" refers to loci which were monomorphic in a given validation panel