Bradyrhizobium and mesorhizobium strains in indigenous South African legumes

Supplementary tables of bradyrhizobium and mesorhizobium strain information regarding host, source, country of isolation, accession numbers, and references used for construction of both housekeeping and symbiotic gene phylogenies. Supplementary figures include a maximum likelihood of phylogeny of a multi locus sequence analysis (MLSA) phylogeny constructed in RAXML including all type strains as well Genisteae associated bradyrhizobium strains, as well as nodA and nifH maximum likelihood phylogenies of mesorhizobium and bradyrhizobium strains. The nodA and nifH  aligned nucleotide dataset was converted into haplotypes using the DNASP6 programme, translated into amino acid data which was used to construct ML phylogenies in RAXML. The symbiotic loci phylogenegies where used to evaluate the evolutionary histories of our strains as well as any host or phylogeographic patterns.

补充表格包含关于豆科根瘤菌属和中间根瘤菌属菌株的信息，包括宿主、来源、分离国家、登录号以及构建管家基因和共生基因系统发育树所使用的参考文献。补充图包括在RAXML中构建的多位点序列分析（MLSA）系统发育树的最大似然值，其中包括所有类型菌株以及与豆科相关的根瘤菌菌株，以及中间根瘤菌和豆科根瘤菌菌株的nodA和nifH最大似然系统发育树。使用DNASP6程序将nodA和nifH对齐的核苷酸数据集转换为单倍型，并将其翻译为氨基酸数据，用于在RAXML中构建最大似然系统发育树。共生基因位点系统发育树被用于评估菌株的进化历史以及宿主或系统地理学模式。