RNA-seq data analysis workflow and scripts supporting the study: SARS-CoV-2 Omicron ORF9b disrupts mitochondrial homeostasis and drives metabolic reprogramming (Defresne et al., 2026)

This respository contains a complete RNA-seq workflow used to process and analyze RNA-sequencing results from SARS-CoV-2-Omicron-infected IGROV cells as part of the study: SARS-CoV-2 Omicron ORF9b disrupts mitochondrial homeostasis and drives metabolic reprogramming (Defresne et al., 2026) The raw RNA-seq data supporting this workflow are publicly available at the NCBI Gene Expression Omnibus (GEO) under accession number .