Advancing source tracking: systematic review and source-specific genome database curation of fecally shed prokaryotes
收藏NIAID Data Ecosystem2026-05-01 收录
下载链接：
https://zenodo.org/record/10728775
下载链接
链接失效反馈官方服务：
资源简介：
This repository contains several files describing the data discussed in Lindner et al's "Advancing source tracking: systematic review and source-specific genome database curation of fecally shed prokaryotes".
"database.fna" = concatenation of the (draft or complete) genome sequences described in the paper (n=12,730 source associated prokaryotic genomes) which passed quality checks and are species-level representatives (i.e., dereplicated at 95% ANI).
"gdef.txt" = a manifest describing which sequences belong to which genomes.
"sources.txt" = a manifest describing which genomes belong to which sources.
The sources this database covers:
Source Category
Species-level genome count
Source-specificspecies-level genome count
Bird
56
40
Cat
86
6
Chicken
1314
887
Cow
39
15
Dog
139
56
Pig
2764
2035
Ruminant
740
714
Human
4484
3350
Wastewater
3108
3097
See publication for further details.
创建时间：
2024-04-30
