Data DescriptorGenomic resources of aquatic Lepidoptera reveal similarities with Trichoptera in amino acid composition of silk genes
收藏Mendeley Data2024-04-15 更新2024-06-30 收录
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https://figshare.com/articles/dataset/_b_Data_Descriptor_b_i_Genomic_resources_of_aquatic_Lepidoptera_reveal_similarities_with_Trichoptera_in_amino_acid_composition_of_silk_genes_i_/24547678
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资源简介:
README Files for Elophila obliteratis:elophila_both_dc_hifiasm.final2 - Primary genome assembly Elophila_obliteralis_alternate_assembly.fasta – Alternate genome assembly Elophila_obliteralis_blast2go_results.pdf – Blast2go Results (functional annotation) Elophila_obliteralis_blastp.xml – Blasted proteins Elophila_obliteralis_braker_annotation.gtf – Braker Annotation (structural annotation) Elophila_obliteralis_braker_annotation_proteins.aa – Annotated Proteins Elophila_obliteralis_repeatmasked_assembly.fasta – Repeat masked assembly (softmasked) Files for Hyposmocoma kahamanoahypo_dc_asm.final2.fasta - Primary genome assembly Hyposmocoma_kahamanoa_alternate_assembly.fa – Alternate genome assembly Hyposmocoma_kahamanoa_blast2go_results.pdf – Blast2go Results (functional annotation) Hyposmocoma_kahamanoa_blastp.xml – Blasted proteins Hyposmocoma_kahamanoa_braker_annotation.gtf – Braker Annotation (structural annotation) Hyposmocoma_kahamanoa_braker_annotation_proteins.aa – Annotated Proteins Hyposmocoma_kahamanoa_repeatmasked_assembly.fasta – Repeat masked assembly (softmasked)Heavy chain fibroin sequences submitted to Genbank:Data file S1: amino_acid_compositions.xlsx - Excel file with amino acid composition based on above table and Heckenhauer, J. et al. Characterization of the primary structure of the major silk gene, h-fibroin, across caddisfly (Trichoptera) suborders. iScience 26, 107253 (2023).figure2.r - R script to generate figure 2c_term_RAxMLBootstrappingTrees.nex - RAxMLBootstrappingTrees of c-terminal region of h-fibroinn_term_RAxMLBootstrappingTrees.nex - RAxMLBootstrappingTrees of n-terminal region of h-fibroindistance_matrix_c_term.csv - Percentage of bases which are identical in c-terminal alignmentdistance_matrix_n_term.csv - Percentage of bases which are identical in n-terminal alignment
创建时间:
2024-04-11



