Amino acid sequences of 33 DNase II were aligned by using CLASTALX 2.1 and phylogenetic tree was generated by the neighbor-joining method using PHYLIP 3.695. Ts-Pt was highlighted in red. The scale ba
Pfam_datasets.zip : Pfam training and test sets. 05_clades.zip : Training and test sets of five clades. non_reversible_matrices.zip : Six time non-reversible
P_Markovian.txt. Probability matrices for codons according to Eq. 2 for various t. The file is structured in 12 columns: the first two contain i and j, the other ten P ij c ( t ) $P^{c}_{ij}(t)$ respe
