Gene family data from the PhyloGenes (release version 1.2, phylogenes.org)

The compressed file contains: <br> 1. PhyloXML_files This folder has family trees in PhyloXML format, one file per family (e.g. &lt;family_ID&gt;.xml). The following information is provided for each node of a tree:<br> 1) leaf node:<br> branch length<br> name &lt;gene_id&gt;<br> taxonomy scientific_name<br> sequence accession &lt;UniProt ID&gt; 2) non-leaf node:<br> branch length<br> events &lt;duplication or speciation&gt; <br> 2. phylogenes_csv.tar.xz This tar file has gene information of family members in CSV format, one file per family (e.g. &lt;family_ID&gt;.csv). A CSV file includes the following columns:<br> Uniprot ID<br> Gene &lt;Gene name. If none then Gene ID&gt;<br> Gene ID<br> Gene name<br> Organism<br> Subfamily name Any columns displayed after 'Subfamily name' are 'Known functions'. Each 'Known function' is a GO molecular function term that is annotated to at least one member of the gene family AND that the annotation is supported by an experimental evidence. Number 1 or 0 indicates the presence or absence of a particular function in a gene.