SUPPLEMENTAL DATA: Genomic phylogeography of the White-crowned Manakin Pseudopipra pipra (Aves: Pipridae) illuminates a continental-scale radiation out of the Andes

SUPPLEMENTAL DATA FOR

Genomic phylogeography of the White-crowned Manakin Pseudopipra pipra (Aves: Pipridae)
illuminates a continental-scale radiation out of the Andes

Author Affiliations:
Jacob S. Berv (1,2,3), Leonardo Campagna (1,2), Teresa J. Feo (4), Ivandy Castro-Astor (5),
Camila C. Ribas (6), Richard O. Prum (7), Irby J. Lovette (1,2)

1. Fuller Evolutionary Biology Program, Cornell Lab of Ornithology, 159
Sapsucker Woods Road, Ithaca, NY 14850, USA.

2. Department of Ecology and Evolutionary Biology, Cornell University,
215 Tower Road, Ithaca, NY 14853, USA.

3. Department of Ecology and Evolutionary Biology, and University of Michigan
Museum of Paleontology, 1105 North University Avenue, Biological Sciences
Building, Ann Arbor, MI 48109-1085, USA.

4. Department of Vertebrate Zoology, MRC-116, National Museum of Natural
History, Smithsonian Institution, Washington, DC 20013, USA.

5. Department of Biology, City College of New York and CUNY Graduate Center,
City University of New York, New York, NY 10031, USA

6. Coordenacão de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia,
Manaus, AM, Brazil

7. Department of Ecology and Evolutionary Biology, and Peabody Museum of
Natural History, Yale University, New Haven, Connecticut, 06520, USA.

Correspondence to Jacob S. Berv ([e-mail])

LAST UPDATED 28 APRIL 2021

CODE WILL ALSO BE MADE AVAILABLE AT
https://github.com/jakeberv

The parent directory contains many data files related to the analyses presented in
this manuscript. The top level file 'Pseudopipra_code.R' contains function definitions
and code used for most of the analyses in this article. This code is annotated with
descriptions throughout. Note that all files referenced within various subdirectories
must be unzipped for the R code to work. Download "Supplemental Data.zip" to
download the entire archive, or browse individual files for download.

SEE README.TXT for additional information