2. dN/dS ratio sister-clades analysis

This folder contains the input and output files used in and obtained from the program PAML (Yang 2007) for the sister-clade analysis of dN/dS ratios (program component codeml). This folder is organised into subfolders by source study name and then by gene. The numbers at the beginning of the folder names do not have significance and are only used for organisational purposes. Each gene folder contains 4 files: 1 control file (“.ctl”), 1 nucleotide file (“.nuc”), 1 tree file (“.trees”), and 1 output file.