RNA sequencing data of mouse caecum tissue following different dietary treatments

Mice were fed either a semi-synthetic diet ('SSD'), or the same diet supplemented with the fiber inulin ('inulin'). Mice were then infected with Trichuris muris ('Tm'). Overall design: Mice recevied the diets 14 days prior to infection. After infection mice either continued on their pre-assigned diet, or were swtiched to an alternative diet. Mice were killed at either 7 or 11 days post-infection