Additional file 11: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

Genetic loci associated with Aphanomyces resistance, earliness and plant height detected by genome-wide association mapping using the MLMM method. (a) Genetic positions are estimated on the genetic map resulting from the projection of the marker map from Hamon et al. [43] onto the consensus map from Tayeh et al. [49]; (b) A linkage disequilibrium (LD) block is designed with all markers in LD (r 2 > 0.2) with the associated marker. LD blocks are named in consecutive numerical order following their linkage group (LG) name and their genetic position; (c) Aphanomyces resistance and earliness Meta-QTL (quantitative trait loci) described in [43]; (d) Initial QTL for Aphanomyces resistance and earliness before meta-analysis described in [41, 43]; (e) Trait-associated marker(s) and their genetic position(s) in the LD blocks. PsCam- markers are SNPs developed by Tayeh et al. [49], Af is a morphological gene involved in leaves shape, other markers are SSRs (detected allele in brackets); (f) Minor allele frequency (MAF) of each detected marker in the collection; (g) Variables are coded as described in Additional file 4; (h) significant p-value of the marker-trait association < 2.5E-5; (i) mean value of the trait corrected with the effect of all markers included in the MLMM analysis; (j) allelic effect of the marker on the variable, the sign depends on the allele code; (k) standard error at the marker around the mean value of the trait in the collection. (XLSX 32 kb)