Supplementary phylogenetic data for Rouïl et. al. 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals"

Supplementary phylogenetic data for Rouïl <em>et. al.</em> 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals" The data set consists of the following sub-directories: 1) "APSE_conserved_proteins_alns": Single-copy conserved genes codon sequences and alignments in FASTA format. 2) "APSE_phylogeny": Files used for APSE phylogenetic and recombination analyses. 3) "APSE_toxin_lyzozyme": Files used for APSE toxin-cassette and lyzozyme-related gene phylogenies. 4) "Arsenophonus_PHASTER": PHASTER phage annotation output files organised by organisim and contig/scaffold. 5) "Hamiltonella_drafts": Newly-sequenced low-coverage draft <em>Hamiltonella</em> genomes in FASTA format. 5) "Hamiltonella_phylogeny": files used for <em>Hamiltonella</em> phylogenetic analysis. See enclosed README.txt file for more details.