Trees in newick format

This is a .zip file containing the within-host HIV, H5N1 influenza and ebola virus trees in Newick format which were analysed in the paper. Many thanks to Andrew Rambaut (University of Edinburgh) for providing the ebola phylogeny. Data originally from: 1) Within-host HIV (P83_HIV.nwk) Frost SDW, Wrin T, Smith DM, Kosakovsky Pond SL, Liu Y, et al. (2005) Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection. Proc Natl Acad Sci USA 102: 18514-9 2) H5N1 influenza (H5N1_flu.nwk) Wallace RG, HoDac H, Lathrop RH, Fitch WM (2007) A statistical phylogeography of influenza A H5N1. Proc Natl Acad Sci USA 104: 4473-4478. 3) Ebola Virus (Ebola.nwk) Gire SK, Goba A, Andersen KG, Sealfon RSG, Park DJ, et al. (2014) Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science 345: 1369-1372.