Mash-based analyses of E. coli genomes reveal 14 distinct phylogroups
收藏NIAID Data Ecosystem2026-03-12 收录
下载链接：
https://zenodo.org/record/4091749
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资源简介：
To replicate this study the scripts should be ran in the following order. It is expected that you download and unzip the Data.zip file and replace the variable `input_root_folder` in all scripts with the complete file path of the folder where the unzipped Data folder is.
Step 1: Run dataset_creation_filtering_and_stat_filtering.py
Step 2: Run heatmaps_meoids_newick_pcoa.R (Produces Figure 1 and Figure 3b)
Step 3: Run dataset_analysis.py
Step 4: Run SRA_heatmap_plots.py (Produces Figure 2c)
Step 5: Run Figure_3a.R (Produces Figure 3a)
Step 6: Run pangenome_plot_MS.py (Produces Figure 3c)
创建时间：
2020-10-16
