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Porphyromonas gingivalis investigated by RNA-Seq. Porphyromonas gingivalis

NIAID Data Ecosystem2026-03-07 收录

牙周病原体转录组

细菌基因调控

数据链接：

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA149681 数据链接链接失效反馈

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Comparison of transcriptomes for wild-type and the following mutants: LuxS, GppX, cdhR Overall design: Four conditions are compared with at least two replicates for each

应用场景：

创建时间：

2011-12-06

细菌基因调控

核酸结构与功能分析

Sigma factors are an important class of bacterial transcription factors that lend specificity to RNA polymerases by binding to distinct promoter elements for genes in their regulons. Here we show that

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High-confidence CRP binding sites on the ETEC H10407 chromosome identified by ChIP-seq.

转录因子结合位点

细菌基因调控

aChomosome coordinate of the ChIP-seq peak in H10407. Underlined text indicates that the ChIP-seq peak maps to sequence that is not conserved in E. coli K-12. bCRP binding site sequence predicted by M

NIAID Data Ecosystem60

PrrA target genes identified by ChIP-seq and gene expression analysis of R. sphaeroides cells.

PrrA转录因子调控

细菌基因调控

aChromosomal locations of start and stop of ChIP-seq peaks. bFold enrichment of PrrA-myc ChIP over control myc antibody ChIP in WT control. cRegulatory role of PrrA on target operons based on change i

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Comparison of previously identified Ihk/Irr regulated genes [25] with differentially expressed genes of intracellular wildtype bacteria at 2h pi.

细菌基因调控

宿主-病原体相互作用

aMicroarray array data. bGene expression in wildtype and irr-deficient S. pyogenes strains was determined at both early and late exponential growth phase, indicated by EE and LE resp. Genes that show

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Genes identified in the L . sphaericus TL genomes as having upstream Fur box motifs.

细菌基因调控

Furbox元件定位

The identified Fur box sequences and their position in the L. sphaericus 2362 genome are shown, along with the locus tags of the genes that are no more than 250 pb downstream to the Fur box. Gene func

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Porphyromonas gingivalis investigated by RNA-Seq. Porphyromonas gingivalis

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