Interacting proteins with LHX2, OTX2, BRG1 based on immunoprecipitation followed by mass spectrometry.

The table lists the intensities (Log2) of peptides—identified in the IP-MS interactome analysis. Each row contains the name of proteins that could be reconstructed from a set of identified peptides. The MS data analysis was done by the MaxQuant software. The protein Intensities are the Summed up extracted ion current of all isotopic clusters associated with the identified amino acid sequence. T tests analyses (two-tailed, paired done using Perseus software) was done between the proteins that were pulled down using specific antibodies (LHX2, BRG1, OTX2) compared to pulled down using nonspecific IgG. (XLSX)