Supporting data for "Full Genome Survey and Dynamics of Gene Expression in the Greater Amberjack, Seriola dumerili"

Teleosts of the genus <i>Seriola</i>, commonly known as amberjacks, are of high commercial value in international markets due to their flesh quality and worldwide distribution. The species of interest to the Mediterranean aquaculture within the genus <i>Seriola</i>, is the greater amberjack (<i>Seriola dumerili</i>). This species holds great potential for the aquaculture industry, but reproduction in captivity has proven to be challenging and unreliable presumably due to its large size and pelagic migratory nature. Investigations to unravel the molecular background of <i>Seriola</i> species have only recently begun, and consequently molecular data are scarce. Illumina HiSeq sequencing generated a high coverage genome sequence comprising 45,909 scaffolds. Comparative mapping to the congener Japanese yellowtail (<i>Seriola quinqueriadiata</i>) and to the model species medaka (<i>Oryzias latipes</i>) allowed the generation of <i>in silico</i> groups. Transcriptome sequencing of male and female gonads identified significantly differentially expressed transcripts, comprising known sex determining and sex differentiation genes. Investigations in the muscle transcriptome of slow growing individuals, showed that transcripts involved in the biological processes of oxygen and gas transport were differentially expressed compared to fast/normal growing amberjacks, while transcripts involved in muscle functions were found to be enriched in fast/normal growing individuals.
Valuable molecular resources have been generated for the greater amberjack in form of a first draft genome and a reference transcriptome. In addition, genes which may have roles in sex determination or differentiation, and genes that may be responsible for slow growth are suggested.