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Ribosome profiling study of dom34 and hbs1 knockout strains using short (16-nt) and long (28-nt) monosome-protected footprints and disome-protected footprints

Alliance of Genome Resources2026-08-01 收录

核糖体回收

核糖体图谱分析

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https://www.yeastgenome.org/dataset/GSE52968 数据链接链接失效反馈

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Ribosomes that stall before completing peptide synthesis must be recycled and returned to the cytoplasmic pool

应用场景：

核糖体图谱分析

翻译组学

A fundamental goal of genomics is to identify the complete set of expressed proteins. Automated annotation strategies rely on assumptions about protein-coding sequences (CDSs), e.g., they are conserve

NIAID Data Ecosystem70

Ribosome profiling data from the model diatom Thalassiosira pseudonana Part 2

核糖体图谱分析

胁迫响应

Sequencing data from ribosome profiling run described in the protocol paper 'Ribosome profiling in the model diatom Thalassiosira pseudonana' HT_4: High temperature exposure (32°C) for 4 hours HT

NIAID Data Ecosystem30

Estimation of peptide elongation times from ribosome profiling spectra

核糖体图谱分析

肽链延伸时间估计

We develop a model for ribosome-protected fragment (RPF) spectra that accounts for the local codon context-dependent variation of peptide elongation times and fragment processing biases. We use a Marq

NIAID Data Ecosystem20

Additional file 2 of Ribosome profiling in mouse hippocampus: plasticity-induced regulation and bidirectional control by TSC2 and FMRP

核糖体图谱分析

海马体翻译调控

Additional file 2: Table S1. Table of GO terms enriched in Tsc2+/−/WT upregulated RNA and RPFs from Fig. 1D, E (padj < 0.05 for cellular compartment, molecular function, and biological process).

NIAID Data Ecosystem30

Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.. Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.

细菌翻译调控

核糖体图谱分析

Hfq is a transcriptional and translational pleiotropic regulator in several bacteria. RNA-Seq, Ribo-Seq and Proteomic analyses were carried out in the wild-type and a hfq deletion strain of Pseudomona

NIAID Data Ecosystem20

Ribosome profiling study of dom34 and hbs1 knockout strains using short (16-nt) and long (28-nt) monosome-protected footprints and disome-protected footprints

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