Mapped read pairs denote the total number of Hi-C read pairs aligned before mapping quality filtering. Intra-contig read pairs account for the read pairs where both the reads align to same contig and
This study is aimed at sequencing the Hi-C library of mulberry using Illumina technology at high depth to generate a good quality whole genome assembly.
We use deep-sequencing of Hi-C libraries to identify topological boundaries at high resolution and show that boundaries, insulators, and polytene interbands converge on the same short genomic elements