Additional file 16 of Relevance of porcine intestinal organoids as a surrogate for animal experimentation: application to the investigation of host–virus interactions during porcine coronavirus infection

Additional file 16. Gene Ontology analysis results for each infected experimental model. The log2-fold change was calculated for each experimental model (ST cells, piglet jejunums and 2D organoids) between control and infected conditions. A gene was considered to be differentially expressed when its adjusted P value was less than 0.05 and its log2-fold change was either greater than 1 (upregulated) or less than -1 (downregulated). After classification, a Gene Ontology analysis was performed for these genes, and the results are displayed in this table, with each sheet representing the analysis of a different gene set.