Reproducibility Bundle for "MIC*: A Framework for Interpretable Analysis of Ordinal Viability Data"

This record contains the reproducibility bundle for the manuscript:"MIC*: A Framework for Interpretable Analysis of Ordinal Viability Data". The archive includes code, data, figures, and tables used to reproduce the analyses and outputs in the manuscript and supplement. Included files and directories:- `Code_Supplement_OrdinalMIC_Final.qmd` (main reproducibility script)- `_quarto.yml` (Quarto project configuration)- `grateful-refs.bib`- `data/` (raw, processed, and simulation result files)- `figures/` (generated manuscript and supplemental figures)- `tables/` (generated manuscript and supplemental tables)- `Supplemental_Files/`- `MANIFEST.tsv` (file inventory)- `SHA256SUMS.txt` (integrity checksums) Reproducibility notes:- The script defaults to `RUN_SIMULATION <- FALSE` and uses precomputed simulation outputs in `data/`.- To rerun full simulations, set `RUN_SIMULATION <- TRUE` in `Code_Supplement_OrdinalMIC_Final.qmd`.- Rendering command: `quarto render Code_Supplement_OrdinalMIC_Final.qmd`. This package supports transparency and reproducibility for MIC* method development, simulation benchmarking, and case-study applications.