Additional file 1 of Genome-wide analyses reveal intricate genetic mechanisms underlying egg production efficiency in chickens

Additional file 1: Supplementary Table S1 Definition and descriptive statistics of derived traits. Supplementary Table S2 Haplotype-based GWAS summary statistics for up-ECI. Supplementary Table S3 Haplotype-based GWAS summary statistics for all-TILI. Supplementary Table S4 Haplotype-based GWAS summary statistics for all-WEV. Supplementary Table S5 Haplotype-based GWAS summary statistics for up-MILI. Supplementary Table S6 Distribution of BHA and UHA within significant blocks of haplotype-based GWAS. Supplementary Table S7 Information of 39 Chinese local chicken populations. Supplementary Table S8 Correlation between the rank of P-value from SNP-based GWAS and tSDS values. Supplementary Table S9 CCA-based multi-trait GWAS summary statistics for up-stage. Supplementary Table S10 CCA-based multi-trait GWAS summary statistics for sustained-stage. Supplementary Table S11 Candidate genes using significance thresholdin our previous study. Supplementary Table S12 Gene prioritization of candidate genes reported in SNP-based GWAS and haplotype-based GWAS