Seasonal Transcriptome Profile Across Three Different Tissues of the Andean Killifish Orestias ascotanensis

These data support the unpublished manuscript "Seasonal Transcriptome Profile Across Three Different Tissues of the Andean Killifish Orestias ascotanensis" (Maldonado et al., Manuscript ID: SDATA-24-04380).1. Genome Assembly and AnnotationGenome Assembly of Orestias ascotanensis.fa: Reference genome in FASTA format (originally published in Di Genova et al. 2022).annotation_Orestias (1).gtf: Structural annotation (GTF format) of gene models, used for RNA-seq alignment and transcript quantification.03_Gene_Annotation_Orestias_ascotanensis.csv: Detailed functional annotation of protein-coding genes (PCGs), including:Genomic coordinates (scaffold, start, end, strand).Gene/transcript IDs, assigned names, and protein products.Functional terms: InterPro domains, Gene Ontology (GO), KEGG Orthology (KO), and EC numbers.2. Transcriptomic Data01_sample_info.csv: Metadata for RNA-seq samples (tissue, season, replicates, etc.).02_PCG_counts.csv: Raw read counts for all protein-coding genes across samples.04_DEGs.xlsx: Differentially expressed genes (DEGs) across conditions, with fold-change, p-values, and adjusted p-values.Table1_MappingStatistics.xlsx: Sequencing and mapping statistics, including read quality metrics, alignment rates, and sample-specific processing details.3. Long Non-Coding RNA (lncRNA) PredictionsPredicted_lncRNAs_Genomic_Locations_Orestias_ascotanensis.zip: BED files with genomic coordinates of lncRNAs predicted by four tools (CPAT, TransDecoder, FEELnc, RNAmining), including scaffold, coordinates, strand, and transcript IDs (where available).