DatasetS1-3.zip
收藏Figshare2022-04-30 更新2026-04-08 收录
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https://figshare.com/articles/dataset/DatasetS1-3_zip/17711147/1
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资源简介：
Three datasets (.fasta) files are included.<br>DatasetS1.fastaAligned sequences of SPILE-D genes<br><br>The aligned amino acid sequences of the SPILE-D clade genes. The alignment was conducted by mafft with L-INS-i option.<br><br>DatasetS2.fasta<br>All TALE homeodomain sequences used for phylogenetic analysis.<br><br>DatasetsS3_MyTrinity.fasta<br>De novo assembly fasta file of scallop <i>Mizuhopecten yessoensis</i> RNA-seq.RNA-seq reads listed in below were downloaded, and trimming of adapters and quality filtering were conducted using Trimmomatic v.0.37 (Bolger et al., 2014); parameters for quality filtering were set as LEADING:20 TRAILING:20 SLIDINGWINDOW:4:15 MINLEN:36. Then, we performed de novo assembly using Trinity (Haas et al., 2013) with default settings (version:v2.8.4)<br>Used RNA-seq readsSRR10055417SRR2025018SRR4415805SRR4415808SRR4415810SRR4415807SRR4415806SRR4415809SRR4428739SRR4415811SRR4415827SRR4415813SRR4415815SRR4415819SRR4415817SRR4415821SRR4415825SRR4415823
提供机构：
Morino, Yoshiaki
创建时间：
2022-03-26
