Reanalysis of peripheral blood gene expression of IFIH1 rs1990760 variants in critically-ill COVID-19 patients [third-party re-analysis of GSE168400]

Peripheral blood gene expression analysis of IFIH1 rs1990760 variants in critically-ill COVID-19 patients Re-analysis of GSE168400 data processing step: Basecalling was performed using the default Ion Torrent software trimming was performed using the fastp software v0.20.1 and the parameters -f 3, -r, -M 15 Counts were calculated using the pseudoalignment tool salmon v1.4.0 with the default parameters for mapping-based quantification and the hg38 salmon partial index (genome build: hg38 (GRCh38)). Reads were loaded in R using the tximport library. the 42n_expr.txt includes log2 of TPM values